BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008A03SP1|AL425788
(784 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1672 1498 0.0
>3x_Contig1672
Length = 13609
Score = 1498 bits (752), Expect = 0.0
Identities = 775/784 (98%), Gaps = 2/784 (0%)
Strand = Plus / Minus
Query: 1 aaagatgaaactcaaaaactcgctatcaacaagcataaccgcagacatttaatgagaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6251 aaagatgaaactcaaaaactcgctatcaacaagcataaccgcagacatttaatgagaatc 6192
Query: 61 tatccgcacatgttgcggtacaaatcctccaatttcaacccaatacgattttggaaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6191 tatccgcacatgttgcggtacaaatcctccaatttcaacccaatacgattttggaaagaa 6132
Query: 121 ggagtacaaatggtcgcaacaaactggcagacgtatgacctgggcacaacaattgaacca 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6131 ggagtacaaatggtcgcaacaaactggcagacgtatgacctggg-acaacaattgaacca 6073
Query: 181 tgcaatgttccaagtttcactagatagaaattccatctggcattctgggtatgttttgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6072 tgcaatgttccaagtttcactagatagaaattccatctggcattctgggtatgttttgaa 6013
Query: 241 gcccgcycacttgcgaaaagagatacataaaatgaaggacattccagtaattatggaaag 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6012 gcccgctcacttgcgaaaagagatacataaaatgaaggacattccagtaattatggaaag 5953
Query: 301 gctcaaacgggagaagattcatatccatttggacgtaattcctggccagatgttatcctt 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5952 gctcaaacgggagaagattcatatccatttggacgtaatttctggccagatgttatcctt 5893
Query: 361 acaaaactgcaagatactagcaccattcgtagaaatcgaactcattactgacaataccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5892 acaaaactgcaagatactagcaccattcgtagaaatcgaactcattactgacaataccat 5833
Query: 421 ggaatcacttcaccttaccaactgcttgcagccaatggggtatacytccaataactctac 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5832 ggaatcacttcaccttaccaactgcttgcagccaatggggtatacttccaataactctac 5773
Query: 481 ccatgcyaccgcgaattactagcatgagtaatgcytcaaatggtacttttgcyaacatta 540
|||||| |||| |||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 5772 ccatgctaccg-gaattactagcatgagtaatgcttcaaatggtacttttgctaacatta 5714
Query: 541 ctagtacctcaaccaagcgcgttgatagcaacggcagcagcggwaagactgaaccacttt 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5713 ctagtacctcaaccaagcgcgttgatagcaacggcagcagcggtaagactgaaccacttt 5654
Query: 601 gtgaaagtaatggaaccactgttatttcaggtttgtccgcggaagacggaatactcagta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5653 gtgaaagtaatggaaccactgttatttcaggtttgtccgcggaagacggaatactcagta 5594
Query: 661 ctccatctgctcctccagcagtatctgtacctgtccttagttcaccgcaactattttcga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5593 ctccatctgctcctccagcagtatctgtacctgtccttagttcaccgcaactattttcga 5534
Query: 721 caaaatgcttccgtgataacggcttcagtcccgtgtggaatgcgtcgttcgagtgtacac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5533 caaaatgcttccgtgataacggcttcagtcccgtgtggaatgcgtcgttcgagtgtacac 5474
Query: 781 ttac 784
||||
Sbjct: 5473 ttac 5470
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4278
Number of Sequences: 1807
Number of extensions: 4278
Number of successful extensions: 16
Number of sequences better than 1.0e-20: 1
length of query: 784
length of database: 10,358,551
effective HSP length: 16
effective length of query: 768
effective length of database: 10,329,639
effective search space: 7933162752
effective search space used: 7933162752
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.1 bits)